Sequence analysis of Arthrospira maxima based on fosmid library

Arthrospira (Spirulina) (Setchell& Gardner) is an important cyanobacterium not only in its nutritional potential but in its special biological characteristics. An unbiased fosmid library of Arthrospira maxima FACHB438 that contains 4300 clones was constructed. The size distribution of insert fragments is from 15.5 to 48.9 kb and the average size is 37.6 kb. The recombination frequency is 100%. Therefore the library is 29.9 equivalents to the Arthrospira genome size of 5.4 Mb. A total of 719 sample clones were randomly chosen from the library and 602 available sequences, which consisted of 307,547 bases, covering 5.70% of the whole genome. The codon usage of A. maxima was not strongly biased. GC content at the first position of codons (46.9%) was higher than the second (39.8%) and the third (45.5%) positions. GC content of the genome was 43.6%. Of these sequences, 287 (47.7%) showed high similarities to known genes, 63 (10.5%) to hypothetical genes and the remaining 252 (41.8%) had no significant similarities. The assigned genes were classified into 22 categories with respect to different biological roles. Remarkably, the high presence of 25 sequences (4.2%) encoding reverse transcriptase indicates the RT gene may have multiple copies in the A. maxima genome and might play an important role in the evolutionary history and metabolic regulation. In addition, the sequences encoding the ATP-binding cassette transport system and the two-component signal transduction system were the second and third most frequent genes, respectively. These genomic features provide some clues as to the mechanisms by which this organism adapts to the high concentration of bicarbonate and to the high pH environment.

Cloning and sequencing of the phycocyanin gene from Spirulina maxima and its evolutionary analysis (vol 14, pg 307, 2002)

The geneswere cloned for the two apoprotein subunits, alpha and beta, of phycocyanin from the cyanobacterium Spirulina maxima (=Arthrospira maxima) strain F3. The alpha- and beta-subunit gene-coding regions contain 489 bp and 519 bp, respectively. The beta-subunit gene is upstream from the alpha-subunit gene, with a 111-bp segment separating them. Similarities between the alpha-subunits of S. maxima and nine other cyanobacteria were between 58% and 99%, as were those between the beta-subunits. The maximum similarity between the alpha- and beta-subunits from S. maxima was 27%.

The impacts of replacing air bubbles with microspheres for the clarification of algae from low cell-density culture

Dissolved Air Flotation (DAF) is a well-known coagulation-flotation system applied at large scale for microalgae harvesting. Compared to conventional harvesting technologies DAF allows high cell recovery at lower energy demand. By replacing microbubbles with microspheres, the innovative Ballasted Dissolved Air Flotation (BDAF) technique has been reported to achieve the same algae cell removal efficiency, while saving up to 80% of the energy required for the conventional DAF unit. Using three different algae cultures (Scenedesmus obliquus, Chlorella vulgaris and Arthrospira maxima), the present work investigated the practical, economic and environmental advantages of the BDAF system compared to the DAF system. 99% cells separation was achieved with both systems, nevertheless, the BDAF technology allowed up to 95% coagulant reduction depending on the algae species and the pH conditions adopted. In terms of floc structure and strength, the inclusion of microspheres in the algae floc generated a looser aggregate, showing a more compact structure within single cell alga, than large and filamentous cells. Overall, BDAF appeared to be a more reliable and sustainable harvesting system than DAF, as it allowed equal cells recovery reducing energy inputs, coagulant demand and carbon emissions. © 2014 Elsevier Ltd.

Evaluation of photoperiod effect on the growth and protein content of microalgae

Os recursos renováveis têm recebido um especial interesse nos últimos anos e as microalgas são uma excelente fonte renovável e natural. Estes organismos são fonte de proteínas e lípidos e são aplicadas em aquacultura e na produção de biodiesel. Neste estudo, foi avaliado o efeito do fotoperíodo (Luz: Escuro) 12:12; 18:6; 24:0) e fase de crescimento (logarítmica e estacionária) no conteúdo de proteína em três sistemas modelo biológico: Arthrospira maxima (Cyanobacteria) foi selecionada como espécie de água doce a estudar e para explorar microalgas marinhas foram escolhidas Isochrysis galbana (Haptophyta) e Tetraselmis chuii (Chlorophyta) devido às suas aplicações em aquacultura marinha. Diferentes métodos de rutura celular foram também testados na extração de proteína em fase aquosa. Arthrospira maxima exibiu melhor produção de biomassa e conteúdo de proteína no fotoperíodo de 18L:6D. O mesmo fotoperíodo também atingiu melhor produção de biomassa e conteúdo de proteína em Isochrysis galbana quando comparado com os outros fotoperíodos em estudo. Tetraselmis chuii exibiu melhor produção de biomass no fotoperíodo de 24L:0D, enquanto que o fotoperíodo 18L:6D atingiu melhor conteúdo de proteína.

Kinetic and thermodynamic investigation of Arthrospira (Spirulina) platensis fed-batch cultivation in a tubular photobioreactor using urea as nitrogen source

BACKGROUND: Fed-batch culture allows the cultivation of Arthrospira platensis using urea as nitrogen source. Tubular photobioreactors substantially increase cell growth, but the successful use of this cheap nitrogen source requires a knowledge of the kinetic and thermodynamic parameters of the process. This work aims at identifying the effect of two independent variables, temperature (T) and urea daily molar flow-rate (U), on cell growth, biomass composition and thermodynamic parameters involved in this photosynthetic cultivation. RESULTS: The optimal values obtained were T = 32 degrees C and U = 1.16 mmol L-1 d-1, under which the maximum cell concentration was 4186 +/- 39 mg L-1, cell productivity 541 +/- 5 mg L-1 d-1 and yield of biomass on nitrogen 14.3 +/- 0.1 mg mg-1. Applying an Arrhenius-type approach, the thermodynamic parameters of growth (?H* = 98.2 kJ mol-1; ?S* = - 0.020 kJ mol-1 K-1; ?G* = 104.1 kJ mol-1) and its thermal inactivation (Delta H-D(0) =168.9 kJ mol-1; Delta S-D(0) = 0.459 kJ mol-1 K-1; Delta G(D)(0) =31.98 kJ mol-1) were estimated. CONCLUSIONS: To maximize cell growth T and U were simultaneously optimized. Biomass lipid content was not influenced by the experimental conditions, while protein content was dependent on both independent variables. Using urea as nitrogen source prevented the inhibitory effect already observed with ammonium salts. Copyright (c) 2012 Society of Chemical Industry

Investigation of molecular mechanisms regulating biomineralization of pearl oyster Pinctada maxima

Biomineralization is a process encompassing all mineral containing tissues produced within an organism. The most dynamic example of this process is the formation of the mollusk shell, comprising a variety of crystal phases and microstructures. The organic component incorporated within the shell is said to dictate this remarkable architecture. Subsequently, for the past decade considerable research have been undertaken to identify and characterize the protein components involved in biomineralization. Despite these efforts the general understanding of the process remains ambiguous. This study employs a novel molecular approach to further the elucidation of the shell biomineralization. A microarray platform has been custom generated (PmaxArray 1.0) from the pearl oyster Pinctada maxima. PmaxArray 1.0 consists of 4992 expressed sequence tags (ESTs) originating from the mantle, an organ involved in shell formation. This microarray has been used as the primary tool for three separate investigations in an effort to associate transcriptional gene expression from P. maxima to the process of shell biomineralization. The first investigation analyzes the spatial expression of ESTs throughout the mantle organ. The mantle was dissected into five discrete regions and each analyzed for gene expression with PmaxArray 1.0. Over 2000 ESTs were differentially expressed among the tissue sections, identifying five major expression regions. Three of these regions have been proposed to have shell formation functions belonging to nacre, prismatic calcite and periostracum. The spatial gene expression map was confirmed by in situ hybridization, localizing a subset of ESTs from each expression region to the same mantle area. Comparative sequence analysis of ESTs expressed in the proposed shell formation regions with the BLAST tool, revealed a number of the transcripts were novel while others showed significant sequence similarities to previously characterized shell formation genes. The second investigation correlates temporal EST expression during P. maxima larval ontogeny with transitions in shell mineralization during the same period. A timeline documenting the morphologicat microstructural and mineralogical shell characteristics of P. maxima throughout larval ontogeny has been established. Three different shell types were noted based on the physical characters and termed, prodissoconch I, prodissoconch 11 and dissoconch. PmaxArray 1.0 analyzed ESTs expression of animals throughout the larval development of P. maxima, noting up-regulation of 359 ESTs in association with the shell transitions from prodissoconch 1 to prodissoconch 11 to dissoconch. Comparative sequence analysis of these ESTs indicates a number of the transcripts are novel as well as showing significant sequence similarities between ESTs and known shell matrix associated genes and proteins. These ESTs are discussed in relation to the shell characters associated with their temporal expression. The third investigation uses PmaxArray 1.0 to analyze gene expression in the mantle tissue of P. maxima specimens exposed to sub-lethal concentrations of a shell-deforming toxin, tributyltin (TBT). The shell specific effects of TBT are used in this investigation to interpret differential expression of ESTs with respect to shell formation functions. A lethal and sublethal TBT concentration range was established for P. maxima, noting a concentration of 50 ng L- 1 TBT as sub-lethal over a 21 day period. Mantle tissue from P. maxima animals treated with 50 ng L- 1 TBT was assessed for differential EST expression with untreated control animals. A total of 102 ESTs were identified as differentially expressed in association with TBT exposure, comparative sequence identities included an up-regulation of immunity and detoxification related genes and down-regulation of several shell matrix genes. A number of transcripts encoding novel peptides were additionally identified. The potential actions of these genes are discussed with reference to TBT toxicity and shell biomineralization. This thesis has used a microarray platform to analyze gene expression in spatial, temporal and toxicity investigations, revealing the involvement of numerous gene transcripts in specific shell formation functions. Investigation of thousands of transcripts simultaneously has provided a holistic interpretation of the organic components regulating shell biomineralization.

Spatial analysis of biomineralization associated gene expression from the mantle organ of the pearl oyster Pinctada maxima

Background: Biomineralization is a process encompassing all mineral containing tissues produced within an organism. One of the most dynamic examples of this process is the formation of the mollusk shell, comprising a variety of crystal phases and microstructures. The organic component incorporated within the shell is said to dictate this architecture. However general understanding of how this process is achieved remains ambiguous. The mantle is a conserved organ involved in shell formation throughout molluscs. Specifically the mantle is thought to be responsible for secreting the protein component of the shell. This study employs molecular approaches to determine the spatial expression of genes within the mantle tissue to further the elucidation of the shell biomineralization. Results: A microarray platform was custom generated (PmaxArray 1.0) from the pearl oyster Pinctada maxima. PmaxArray 1.0 consists of 4992 expressed sequence tags (ESTs) originating from mantle tissue. This microarray was used to analyze the spatial expression of ESTs throughout the mantle organ. The mantle was dissected into five discrete regions and analyzed for differential gene expression with PmaxArray 1.0. Over 2000 ESTs were determined to be differentially expressed among the tissue sections, identifying five major expression regions. In situ hybridization validated and further localized the expression for a subset of these ESTs. Comparative sequence similarity analysis of these ESTs revealed a number of the transcripts were novel while others showed significant sequence similarities to previously characterized shell related genes.

Temporal tracking of mineralization and transcriptional developments of shell formation during the early life history of pearl oyster Pinctada maxima

Molluscan larval ontogeny is a highly conserved process comprising three principal developmental stages. A characteristic unique to each of these stages is shell design, termed prodissoconch I, prodissoconch II and dissoconch. These shells vary in morphology, mineralogy and microstructure. The discrete temporal transitions in shell biomineralization between these larval stages are utilized in this study to investigate transcriptional involvement in several distinct biomineralization events. Scanning electron microscopy and X-ray diffraction analysis of P. maxima larvae and juveniles collected throughout post-embryonic ontogenesis, document the mineralogy and microstructure of each shelled stage as well as establishing a timeline for transitions in biomineralization. P. maxima larval samples most representative of these biomineralization distinctions and transitions were analyzed for differential gene expression on the microarray platform PmaxArray 1.0. A number of transcripts are reported as differentially expressed in correlation to the mineralization events of P. maxima larval ontogeny. Some of those isolated are known shell matrix genes while others are novel; these are discussed in relation to potential shell formation roles. This interdisciplinary investigation has linked the shell developments of P. maxima larval ontogeny with corresponding gene expression profiles, furthering the elucidation of shell biomineralization.

Resistivity Maxima in Lithium Fast-Ion Conductors at High Pressure

The resistivity of two types of lithium fast-ion conductors, Li16-2xZnx(GeO4)4 (x=1,2) and Li3+xGexV1-xO4 (x=0.25,0.6,0.72), showed pronounced maxima as a function of pressure. For the first type, ln(ρ / ρ0) peaked at values of 0.12 (x=1) and 0.35 (x=2) near 20 kbar and decreased thereafter up to 80 kbar. Thermal activation energies and prefactors also showed corresponding maxima. For the second type, ln(ρ / ρ0) increased to 3-4 between 20 and 32 kbar. Near 80 kbar, ρ decreased (for x=0.25) by a factor of 250. The results are interpreted in terms of negative activation volumes.

On the theory of polarographic maxima

The theory of polarographic maxima is presented taking into account the interaction of momentum transport, the electrostatic potential field, the adsorption—desorption and the faradaic processes. Several earlier results are generalised. The systems approach employed here is also extended to quasi-linear situations.

Monikasvoinen Aamutähti : CMX-yhtyeen Cloaca Maxima -levykokoelman analyysi

Tutkimukseni tehtävä on selvittää, millä tavoin CMX-yhtyeen sanoituksissa käytetään kristinuskoon liittyviä ilmaisuja. CMX on vuonna 1985 perustettu suomalainen yhtye, joka on vuoteen 2008 mennessä julkaissut kaksitoista täysimittaista albumia. CMX-yhtyettä on vaikea sijoittaa yhteen musiikin genreen. Yksinkertaistaen voidaan todeta, että yhtyeen musiikki kehittyi punkista raskaan rockin ja iskelmämusiikin yhdistelmäksi, joka sisältää runsaasti progressiivisen rockin piirteitä. Tutkimukseni kannalta yhtyeen keskeisin jäsen on sen basisti ja laulusolisti Aki Yrjänä, koska hän on myös sanoittanut kaikki tutkimuksessa analysoitavat kappaleet. Aki Yrjänä käyttää taiteilijanimeä A. W. Yrjänä. Valitsin tutkimukseni aineistoksi yhtyeen vuonna 1997 ilmestyneen Cloaca Maxima -levykokoelman, koska se esittelee kattavasti yhtyeen musiikkia vuosilta 1989-1997 ja sisältää valtaosan yhtyeen tunnetuimmista kappaleista. Etsin sanoituksista kristinuskoon liittyvät ilmaisut sisällönanalyysillä. Analysoin ilmaisuja lingvistisen semantiikan avulla sekä vertaamalla niitä erilaisiin uskonkäsityksiin neljässä tutkimusluvussa. Ensimmäinen tutkimusluku sisältää ilmaisut, jotka liittyvät kristinuskon organisaatioon. Analysoin siinä Cloaca Maximan kohdat, joissa mainitaan kirkko, alttari, saarnamies tai saarnaaja. Toinen tutkimusluku sisältää ilmaisut, jotka liittyvät raamatullisiin hahmoihin. Analysoin siinä Cloaca Maximan sanoitukset, joissa esiintyy Maria, Jeesus, Henki, Jumala, Saatana, Perkele, enkeleitä tai henkivaltoja. Olen myös analysoinut Aamutähti-kappaleen nimeä, joka voi Venus-planeetan lisäksi viitata kristillisessä traditiossa Mariaan, Jeesukseen tai Saatanaan. Kolmas tutkimusluku sisältää ilmaisut, jotka löytyvät sekä Cloaca Maximan sanoituksista että Raamatusta. Analysoin siinä Helvetin hyvä paimen -kappaleen nimeä, Jeesuksen "seuraa minua" -ilmaisua hyödyntävää Siivekäs-kappaleen kohtaa sekä Kätketty kukka -kappaleen sanoja, jotka liittyvät hautajaiskaavan siunaussanoihin. Sen lisäksi olen analysoinut kolmannessa tutkimusluvussa Cloaca Maximan sanoitukset, joissa esiintyy sana armo, taivaankansi tai taivaanvahvuus. Neljäs tutkimusluku sisältää ilmaisut, jotka osoittavat Jumalaan kohdistuvaa asennetta. Eri asenteiden keskeiset ajatukset ovat, että Jumalan löytäminen vaatii taitoa, ihmiset unohtavat Jumalan ja että Jumalaa ei ole olemassa. Tutkimukseni tuloksena on, että kristinuskoon liittyviä ilmaisuja käytetään Cloaca Maximan sanoituksissa hyvin erilaisissa tehtävissä. Ilmaisut itsessään ovat myös usein monitulkintaisia, ja kappaleen sisältämät ilmaisut voivat olla keskenään ristiriitaisia. Metaforina käytettävistä ilmaisuista erottuu kaksi ryhmää, joista ensimmäisen ryhmän ilmaisut toimivat kuoleman ja jälkimmäisen ryhmän ilmaisut subjektin tunteiden metaforina. Yrjänän eri lähteistä löytyvistä kommenteista voidaan päätellä, että hän ei halua ohjata kuulijoiden tekemiä tulkintoja mihinkään suuntaan ja että sanoituksien monitulkintaisuus on tarkoituksellista.

A trade-off between maxima in efficiency and specific work output of super- and trans-critical CO2 Brayton cycles

Several operational aspects for thermal power plants in general are non-intuitive and involve simultaneous optimization of a number of operational parameters. In the case of solar operated power plants, it is even more difficult due to varying heat source temperatures induced by variability in insolation levels. This paper introduces a quantitative methodology for load regulation of a CO2 based Brayton cycle power plant using the `thermal efficiency and specific work output' coordinate system. The analysis shows that a transcritical CO2 cycle offers more flexibility under part load performance than the supercritical cycle in case of non-solar power plants. However, for concentrated solar power, where efficiency is important, supercritical CO2 cycle fares better than transcritical CO2 cycle. A number of empirical equations relating heat source temperature, high side pressure with efficiency and specific work output are proposed which could assist in generating control algorithms. (C) 2015 Elsevier B.V. All rights reserved.

Cross-section fluctuations in open microwave billiards and quantum graphs: The counting-of-maxima method revisited

The fluctuations exhibited by the cross sections generated in a compound-nucleus reaction or, more generally, in a quantum-chaotic scattering process, when varying the excitation energy or another external parameter, are characterized by the width Gamma(corr) of the cross-section correlation function. Brink and Stephen Phys. Lett. 5, 77 (1963)] proposed a method for its determination by simply counting the number of maxima featured by the cross sections as a function of the parameter under consideration. They stated that the product of the average number of maxima per unit energy range and Gamma(corr) is constant in the Ercison region of strongly overlapping resonances. We use the analogy between the scattering formalism for compound-nucleus reactions and for microwave resonators to test this method experimentally with unprecedented accuracy using large data sets and propose an analytical description for the regions of isolated and overlapping resonances.

Estudio preliminar sobre la utilización de la semilla de ayote (Cucurbita maxima) en el control de parasitos gastrointestinales en terneros de 3-8 meses de edad en la Hacienda San Emilio, Granada

El presente estudio se realizó con el objetivo de determinar si la semilla de ayote (Cucurbita maxima) fresca ejerce algún efecto en el control de parásitos gastrointestinales en terneros, el cual fue realizado en la Hacienda San Emilio ubicada en el Municipio de Diriomo, departamento de Granada, la temperatura del lugar oscila entre los 27-34ºC. La duración del experimento fue de 14 días a partir de la selección, identificación de los animales y aplicación de los tratamientos. En el estudio se utilizaron tablas de contingencia de variables dicotómicas: control total y reducción parasitaria como columnas y tratamientos como filas. Para el estudio se seleccionaron 20 animales entre los 3-8 meses de edad, estos se dividieron en 4 grupos constituidos por 5 animales para cada uno de los 4 tratamientos; Tratamiento 1: Doramectina 1% (10mg/50kg) SC, Tratamiento 2: semilla de ayote a dosis de 240 mg/kg/ día por 3 días PO, Tratamiento 3: semilla de ayote a dosis de 240mg/ kg por un día PO,Tratamiento 4: animales sin tratamiento. A los animales se les realizaron análisis coprológicos al inicio del estudio para identificar la familia de parásitos y la carga parasitaria. Los terneros fueron pesados e identificados para la aplicación de los tratamientos; posteriormente se realizó otro análisis coprológico con la técnica de Mc Master a los 14 días después del primer día de aplicación de los tratamientos. Se identificaron las familias Trichost rongylidae, Eimeriidae y Strongyloididae. Para la familia Eimeriidae demostró tener un mejor efecto el tratamiento con semilla de ayote; en lo que refiere a disminución de la carga parasitaria tanto la semilla de ayote como la doramectina resultaron efectivos en las familias Trichostrongylidae y Eimeriidae, mientras que en la familia Strongyloididae solo fue efectiva la doramectina. A través del análisis de costos se determinó que es económicamente factible la utilización de semilla de ayote en la Coccidiosis.